PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g18340
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 757aa    MW: 84085 Da    PI: 7.1129
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g18340genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.6e-057798223
                EETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                kC++C+  F ++ n++rH r+H
  CA03g18340 77 KCEKCTWEFYSPINYRRHVRLH 98
                7*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0002807898IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 757 aa     Download sequence    Send to blast
MPVAKLSMGG VTPAAMKADE GNDSLDTLIR QAIGKEPLFS FSRTGDGPVQ WFQLLHGLEQ  60
QDNAGGWPML TPVKFQKCEK CTWEFYSPIN YRRHVRLHRR ALNFDKESRK FRDLLGAFWD  120
KLSLDEIKEV VSLHDVSIKD LSGSSLVQDL AASMRKPAVW TLPQDYYKAG LALLELIQAT  180
PPKLTSQEVF SILDDASERT FLCAGTAESV QKYVFDGDAA KKGLELKNLV ACTSFLFEQK  240
LVKAWFADKD AEALRCQKLL FEEEEAAQKK QAELLERKKL KKLRQKEQRA REQSNWVRGD  300
LEVPVDSFDV PMAESSILSA AVSDSNSSTP EVSDDVSSSI ELVQFSNNED MYIEAQLDLS  360
RQHLDLVEIQ DVEPPQVSAH NRRHFPHSQW QVPKSQRMGR NGFHNNLNHQ VQKLELVQKH  420
GVLKDRGAPV NSSKVWTRKV RVLNGERVRP EPQKEAINQN QSTCEVMIGS ISVPMKNCST  480
HGRGNCPAVE FDSTEPAVPK KGSPSVSVEN CSLHGQDNCP SIERENLDGT ERAMPEKCNL  540
VVKPAKQDAL QGGSNGAAVK LWRSVSRHGS GQPPEEAVIT EKLDNPASST ESSLQFCSID  600
NPIDKSKNYT SQVSDGNVHQ GLAFCSVSAK AFLSQSMFPC CYPCFSLKFV PTYFPIHFCL  660
TCMKMNVGWK EAISGDHVTL VLSNDTEASG HPDAQNGCSE AAPASDDQEH DILVKADNQR  720
ANTGVPNLSS NGNSKVKFRQ KPDKSIKTRY IPKKKP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275282ERKKLKKL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016564580.10.0PREDICTED: uncharacterized protein LOC107863256
TrEMBLM1BAI60.0M1BAI6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000408430.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37222128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.11e-100C2H2-like zinc finger protein